PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009801965.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 237aa MW: 27608.6 Da PI: 9.2827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.6e-11	16	63	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RR+++++ +++L +llP+ a +++ l+ + L A++YIksL+ XP_009801965.1 16 KYVEKNRRNNMKNLYNQLYSLLPNhA---SKETLTLPDQLDTATNYIKSLE 63 568*******************55...7777**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.446	10	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-12	13	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-10	15	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0044	16	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-7	17	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MESGLRSNSA PKLERKYVEK NRRNNMKNLY NQLYSLLPNH ASKETLTLPD QLDTATNYIK 60 SLETKLKKKK KYMEELRISR KRPQSFNATN SEPSSSTKSL IPHIEFHEMS PTMFVVLITG 120 LDNLATFYNV IQLLHEEGVE VVYSNFSLNG NSMLQISLET KMDKNSTMEF RATTLFDKLK 180 ELLYGSSRKN YMESHLHLWE YIFESELLGF DALELLPIAS QNPTLQYNYM QKNLRNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	82	KKKKKYMEELRISRKRP
2	69	81	KKYMEELRISRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801965.1	1e-173	PREDICTED: transcription factor bHLH120-like
TrEMBL	A0A1U7YT30	1e-171	A0A1U7YT30_NICSY; transcription factor bHLH120-like
STRING	XP_009801965.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-20	bHLH family protein