PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801953.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 354aa    MW: 41112.1 Da    PI: 9.8524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-141695999
                    HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k+g l +p  f+ ++ ++ +e+++  +  +  ++W+vk+  +++    ++++GW++F+++++L+ gD +vF+++g++ef   v++f++
  XP_009801953.1 16 PGFKNG-LKIPTGFL-KYLKV-HEHIERAVLRRGIKQWRVKV--NGR----YIEEGWEKFAEEHDLQLGDLLVFRHEGNMEF--EVSIFDS 95
                    566666.********.77444.4667888889999*******..444....6999**********************99999..9999986 PP
2B359.75e-19161240587
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     +++++ l +g l+lp++fa+++g++++ + +l+++d + rsW++kl  + +++r+++++GW++ v +n LkegD + F+   +
  XP_009801953.1 161 TIQPYCLFRGYLSLPRQFAKANGLSNK-KCDLIIKDDRQRSWKLKL--SSSKSRVYMGDGWRKLVTDNCLKEGDRIRFEIATN 240
                     678999999*************88854.459***************..999999************************96543 PP
3B332.61.4e-10291351264
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                     fk ++ ++ l+sg l+lpk+fa ++g+ +++s  l+++de+ rsW++kl+ rk+++++++++G
  XP_009801953.1 291 FKCTLGEYCLSSGFLYLPKQFAIANGLANKCS--LIIRDEKQRSWNLKLSSRKNKNEVYIGDG 351
                     6777788999***************9998886..**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-21398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-20498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041796IPR003340B3 DNA binding domain
CDDcd100171.04E-15894No hitNo description
SMARTSM010192.1E-161096IPR003340B3 DNA binding domain
PfamPF023626.0E-111895IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-19155244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18156245IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.788157251IPR003340B3 DNA binding domain
SMARTSM010196.9E-16158250IPR003340B3 DNA binding domain
PfamPF023628.8E-17160242IPR003340B3 DNA binding domain
CDDcd100172.61E-15165236No hitNo description
SuperFamilySSF1019367.06E-9288352IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-9288351No hitNo description
Gene3DG3DSA:2.40.330.102.9E-8288353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.979290354IPR003340B3 DNA binding domain
PfamPF023622.0E-8291351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKIPPKKPHF FKPILPGFKN GLKIPTGFLK YLKVHEHIER AVLRRGIKQW RVKVNGRYIE  60
EGWEKFAEEH DLQLGDLLVF RHEGNMEFEV SIFDSSHCDR EYSEYLRQQQ EEANNVEEIS  120
KKFEFKEKPS RGIKLSINED SSHAEAATYE KPFGQSHFVC TIQPYCLFRG YLSLPRQFAK  180
ANGLSNKKCD LIIKDDRQRS WKLKLSSSKS RVYMGDGWRK LVTDNCLKEG DRIRFEIATN  240
GETPIWKSQV LTDETPIRKF QDKPSPRIKL SNKASSHAEA STKKPFGHSY FKCTLGEYCL  300
SSGFLYLPKQ FAIANGLANK CSLIIRDEKQ RSWNLKLSSR KNKNEVYIGD GFHC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092833e-34AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755203e-34HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801953.10.0PREDICTED: B3 domain-containing protein REM10-like
RefseqXP_016464849.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1S3ZKL30.0A0A1S3ZKL3_TOBAC; B3 domain-containing protein REM10-like
TrEMBLA0A1U7YFN50.0A0A1U7YFN5_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009801953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-38B3 family protein