PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801833.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 443aa    MW: 49784 Da    PI: 9.1223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16222268455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_009801833.1 222 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 268
                     5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-17217284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.739218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-18221292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13222268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-15223272No hitNo description
SMARTSM003531.0E-16224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSHNWNHRQQ RQEQTVELPE EENRYPHVHN QQPQNHLVPM SKCEVAELTW ENGQLAMHRL  60
GNNLPNEQAK HTWERASDTL ESVVHQATNC QMQNLDLKGS DKNKANINKE NIVKQETIGG  120
MAKKRMRSDS DPQLYGISGR LVGEFHKNIF DQNAEPSASA SVRDTVMTWP NYHSLDESSR  180
SFKSKVTFNE DSACHIAGLE NKEEERETKG SNTLRRSRTA AVHNQSERRR RDRINEKMKA  240
LQKLVPNASK TDKASMLDEV IKYLKQLQAQ IQLISSARNM ESQMMMQLPL GMQLPHIQMP  300
LLARMGMGVN LGMTPGMLNN MTANLARAAA TTPHQSLTAP FIYPTSIATS CPPFMSPAFA  360
MAPTIPTPPQ ANGDASASRA AVASSVTNSF PFNDPRSAFL AQSMNMEFNN QLAAQYMQQA  420
DNQSMQTRSK NLNQGNLNQR QTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801833.10.0PREDICTED: transcription factor PIF7
TrEMBLA0A1U7YFB60.0A0A1U7YFB6_NICSY; transcription factor PIF7
STRINGXP_009801833.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-41bHLH family protein