PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009801820.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 243aa MW: 27331.4 Da PI: 5.4427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.5e-06	183	227	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n E++RR ++++ L+ ++P + +++ +++L +Av+Y+ksL XP_009801820.1 183 TSNCSEKKRR-KLKKMVKALKGIVPGS-----SRMNTVTVLDEAVRYLKSL 227 5689999998.7***********97.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.944	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-9	180	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.51E-9	182	232	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.0E-9	182	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-8	185	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQSNYQFSPQ KPFFSPEDQA GGGNIFDIPS PSVFGAMALP TGFNPSVPVH GFEFQSSEAC 60 PKNFIIFDQT DYRSQIMFHP AMASKFPYPD LKFNAPYFQD SMERKVANNE NTEVSSYLKE 120 DSADINALLS FEEEEHEEYD DEEVSTARTD ANYGNSSPES YSNYDCQSKK SRTTSFRKSS 180 GSTSNCSEKK RRKLKKMVKA LKGIVPGSSR MNTVTVLDEA VRYLKSLKVE VQKLGVENLK 240 TFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	192	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801820.1	0.0	PREDICTED: transcription factor bHLH144-like
Refseq	XP_009801821.1	0.0	PREDICTED: transcription factor bHLH144-like
Refseq	XP_009801822.1	0.0	PREDICTED: transcription factor bHLH144-like
TrEMBL	A0A1U7YSM3	1e-180	A0A1U7YSM3_NICSY; transcription factor bHLH144-like
STRING	XP_009801820.1	1e-180	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	2e-29	bHLH family protein