PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009801662.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 298aa MW: 32256.4 Da PI: 6.605

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.9	5.1e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q XP_009801662.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQN 98 6******************************************************************************************** PP DUF260 91 kaelallk 98 ++e++l + XP_009801662.1 99 AVEAVLKG 106 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.8E-87	1	293	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.681	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPVT PIASEVAVNN 120 NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRFKRSAT NTKATKANPV CSGSGDESAL 180 EKVNGSTSHD SSLSHQSEAA AVSAPNAQCE SREIESLQSA EMAEAEDSTA VEPASVSQVD 240 DRAEDGEIEL ELTLGFAPFA TSHGKPKDTK RSEAVHLLDA AGECKMELGL TFRCDQFC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801662.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-97	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U7YC06	0.0	A0A1U7YC06_NICSY; LOB domain-containing protein 41-like
STRING	XP_009801662.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-91	LOB domain-containing protein 41