PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009801444.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 271aa MW: 30849.6 Da PI: 6.7086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801444.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	2e-12	104	155	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ + ++ Lr+llP ++K s ++ +A +YI +Lq XP_009801444.1 104 KIIHREIERQRRQEMSNLYASLRQLLPLeY---LKGKRSTSDHILEAANYIEHLQ 155 5669**********************77...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-15	101	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-11	101	159	No hit	No description
PROSITE profile	PS50888	13.357	102	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-10	104	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	105	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-5	108	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MMDKDNFHSL FPFQQNDDND NHRLLYPPTN TNSSSFLYYQ EDNIQLQDLV TDLTPFHSLE 60 VDTNNVQVNN TNKINKRGKK SQNSSSAVSL QVDENNADHC KQKKIIHREI ERQRRQEMSN 120 LYASLRQLLP LEYLKGKRST SDHILEAANY IEHLQKKVSK MEDNRDKLKK ALSSSDVEYP 180 KSGCSSSAAI ITVRLCLDGM EILTDCSDTN EGFYISRVLE VLLREGLSIV SCSCNKVNGR 240 LLHTIRTEVC SPSSIDAYEL QQKLAATVNS N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801444.1	0.0	PREDICTED: transcription factor bHLH118-like
Refseq	XP_016489170.1	0.0	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S4BJW0	0.0	A0A1S4BJW0_TOBAC; transcription factor bHLH118-like
TrEMBL	A0A1U7YQE4	0.0	A0A1U7YQE4_NICSY; transcription factor bHLH118-like
STRING	XP_009801444.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	1e-26	bHLH family protein