PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009801244.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 670aa MW: 77799.6 Da PI: 6.6565

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009801244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2e-23	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ ++++w++ ++el+HnH+++ XP_009801244.1 59 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLADSKRWRIVEVELQHNHPVS 143 6*******************999**************9988.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-21	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-23	264	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.31	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MEAVCLNSDP VFDDCEEYED EEDCSVEEHD DGVHEKDSKK ESPQPTIGLE FGSFDEAYDF 60 YNRYGKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSGANHPRPE TRTGCPAMLV 120 IKLADSKRWR IVEVELQHNH PVSPEVRRFY KSHKKMILAD KKQQESIPIT EVHTIKLYRT 180 SIDAACNGLQ KIKDKDSRFP VDTSKHLELK EGDANALYNY FCRMKLTNPN FFYLLDLDDQ 240 GCLRNVFWAD ARSRAAFNYF SDAVAIDTTS LRNKYVLPLI SFVGVNNHGQ PVLLGCGFLG 300 HESVEYFIWM FKSWHTSMLG RHPQVIVTDQ SKPLQIAVSK VFPQARHCYC LSYIMQRVPE 360 KLGGLDGYES IKMQLYKAVY DSLKITEFES SWGQMISQHG LKDNKWLQSL YEDREKWVPV 420 YLKDISFMGI IPITENESLN AYFDGYVHKH TSFKEFVDKY DLAMQRKHMK EAMADMESRS 480 LSFELKTNCN FEVKLSKIFT KEIFKKFQAE VEGIYSCFNT RQVNINGPIM TFVVKERVES 540 EGSEVEVKLF EVLYETTQAE IRCICSLFNF KGYLCRHALN VLNYNGVEEI PSQYILPRWD 600 KDYKRKFPVD SGLCHIDVNN PVELYNILHK HVMQVVEEGV QSEEHYKAVL QEVEALLSRF 660 SLEDNNLVSL

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MEAVCLNSDP VFDDCEEYED EEDCSVEEHD DGVHEKDSKK ESPQPTIGLE FGSFDEAYDF  60
YNRYGKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSGANHPRPE TRTGCPAMLV  120
IKLADSKRWR IVEVELQHNH PVSPEVRRFY KSHKKMILAD KKQQESIPIT EVHTIKLYRT  180
SIDAACNGLQ KIKDKDSRFP VDTSKHLELK EGDANALYNY FCRMKLTNPN FFYLLDLDDQ  240
GCLRNVFWAD ARSRAAFNYF SDAVAIDTTS LRNKYVLPLI SFVGVNNHGQ PVLLGCGFLG  300
HESVEYFIWM FKSWHTSMLG RHPQVIVTDQ SKPLQIAVSK VFPQARHCYC LSYIMQRVPE  360
KLGGLDGYES IKMQLYKAVY DSLKITEFES SWGQMISQHG LKDNKWLQSL YEDREKWVPV  420
YLKDISFMGI IPITENESLN AYFDGYVHKH TSFKEFVDKY DLAMQRKHMK EAMADMESRS  480
LSFELKTNCN FEVKLSKIFT KEIFKKFQAE VEGIYSCFNT RQVNINGPIM TFVVKERVES  540
EGSEVEVKLF EVLYETTQAE IRCICSLFNF KGYLCRHALN VLNYNGVEEI PSQYILPRWD  600
KDYKRKFPVD SGLCHIDVNN PVELYNILHK HVMQVVEEGV QSEEHYKAVL QEVEALLSRF  660
SLEDNNLVSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801241.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_009801242.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_016487876.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S4BG85	0.0	A0A1S4BG85_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A1U7YAU2	0.0	A0A1U7YAU2_NICSY; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_009801241.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]