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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009801217.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | C3H | ||||||||
| Protein Properties | Length: 335aa MW: 35651.1 Da PI: 7.2369 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 25.5 | 2.2e-08 | 174 | 196 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
Cr + tGtC++G++C+F Hg+
XP_009801217.1 174 VCRWWGDTGTCRFGSKCRFVHGK 196
6777778**************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00356 | 0.0019 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.15E-7 | 172 | 201 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.6E-6 | 173 | 196 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-11 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.882 | 174 | 197 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 335 aa Download sequence Send to blast |
MDLFCGNSND SQASKVQSLD VSPINSQNFI GRGRFYPGPK TRILDPYTSS DSSGSSSNRV 60 LSPLARYLHS SSPVSFASDS PERRSLVNTS SGSRSGSGSG GVFRSPLASI ENIEILPAFR 120 TPVKVEEDVV VMDGILVEPK HGARAKSSPS TSDSGGRWSS STSGSENSSH MSEVCRWWGD 180 TGTCRFGSKC RFVHGKEDLR PTAFATWNHS EAPSSRSYSS GSCAYGPRGR SAHHQVHSAA 240 SSTESAAMAT PTAVKKIVST KDKEPPSSDS SPSSTTSTIG ISGTDWSPLD DNIEVSLPSG 300 EKCPSREDVD AHIQTVLYGL SGRKRLPVCV EFSEE |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009801215.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_009801216.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_009801217.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_009801218.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_016438840.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_016438841.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| Refseq | XP_016438842.1 | 0.0 | PREDICTED: tristetraprolin-like | ||||
| TrEMBL | A0A1S3XG02 | 0.0 | A0A1S3XG02_TOBAC; tristetraprolin-like | ||||
| TrEMBL | A0A1U7YQU8 | 0.0 | A0A1U7YQU8_NICSY; tristetraprolin-like | ||||
| STRING | XP_009801215.1 | 0.0 | (Nicotiana sylvestris) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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