PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800782.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 304aa    MW: 33157.4 Da    PI: 6.4196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1389136455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  XP_009800782.1  89 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136
                     56678*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1685153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.15785135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-1488140No hitNo description
Gene3DG3DSA:4.10.280.105.1E-1588147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1090136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-993141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.12E-6223276No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-6224279No hitNo description
PROSITE profilePS516719.537227304IPR002912ACT domain
CDDcd048733.87E-5228266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDEGGEDCFI WENQGWGFLN SDNSGGNGAK SSGTKLPDTL QLAVSDVVAR EIEMAGPSAG  60
RKRTANGVKG NGEVNEGKVN GGGESDHEMH IWTERERRKK MRNMFSNLHA LLPQLPPKAD  120
KSTIVDEAVN YIKTLQHTLQ KLQRQKLERL HGMATSMNPS IITSQKLSAD SIISREAFLA  180
DQGSTNNAAI SPTNNAANPI SMPHFPAVFQ SWTSPNVILN VCGEEAHISV CCPKKPGLLS  240
SICYVLEKHK IEVVSAQISS NDQRNMYMIQ AHASGASDQF SETFPVEEIY KQAAGEIIMC  300
VTSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2375862e-32AC237586.1 Populus trichocarpa clone POP031-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800782.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1U7Y9I30.0A0A1U7Y9I3_NICSY; transcription factor bHLH95-like
STRINGXP_009800782.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-51bHLH family protein