PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800017.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 231aa    MW: 26226.9 Da    PI: 9.469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-0879107538
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKl 38 
                     h+++Er RR+ri +++  L+el+P++      K 
  XP_009800017.1  79 HSIAERLRRERISERIKALQELVPSCN-----KT 107
                     99***********************82.....33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.07E-772126No hitNo description
SuperFamilySSF474599.16E-1272130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.91974123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1176129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-679108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-780127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
YGRFGIHVHL REREAMNMGN LYPGLEHLQS HAVRHTVSQV HRVQPFQGQP TSSTAVTVPH  60
PPAIRPRVRA RRGQATDPHS IAERLRRERI SERIKALQEL VPSCNKTDRA AMLDDIYVKF  120
LRLQVKVIRR STISDSSTVR LFHLLQDLFI SSISMGDSGE SRSNQHVWEK WSNVETEEEV  180
AKLMEEDVGA AMQYLQSKSL CIMPISLAIL IYPTQQTDNQ SVVKPESSAL P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132311e-109BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800017.11e-172PREDICTED: transcription factor UNE12-like, partial
RefseqXP_016499382.11e-172PREDICTED: transcription factor UNE12-like, partial
SwissprotO227682e-62UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S4CDT71e-170A0A1S4CDT7_TOBAC; transcription factor UNE12-like
TrEMBLA0A1U7Y7B61e-170A0A1U7Y7B6_NICSY; transcription factor UNE12-like
STRINGXP_009800017.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]