PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799939.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 414aa    MW: 46167.8 Da    PI: 6.2674
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.49.5e-38177274298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwse+Deiv+L+G++d++ k++++p++d++af++f+kks++++vsk+ql +KirrLKkK++++  k +k +ke +fsk+h+qk++elskki
  XP_009799939.1 177 LFQRLWSEDDEIVILKGMVDYRLKKKSDPVADLSAFHDFIKKSLHVDVSKTQLQDKIRRLKKKYENNAGKeKKGKKERTFSKPHEQKTYELSKKI 271
                     79******************************************************************99455667999**************** PP

          DUF573  96 Wgs 98 
                     Wg+
  XP_009799939.1 272 WGK 274
                     *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-34178273IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAKKHTEEEE ESGDEMEVSS PGNADSESES ESESEPEPEP EKQQPPMKKP PFAAPKKPQP  60
PEDSSSSAEE SGSESEFESE SEPGTQKPNS VTVEPLASKP MDGPKKSAPK PRSKPNATAK  120
PTSPPPAKPS AGAGAKRPVA VDDGKTKESK RSKKTPKKEI ETPVKQKTPT EDVKRQLFQR  180
LWSEDDEIVI LKGMVDYRLK KKSDPVADLS AFHDFIKKSL HVDVSKTQLQ DKIRRLKKKY  240
ENNAGKEKKG KKERTFSKPH EQKTYELSKK IWGKEKTDNK GEKVEEVDRV VENGTTSKKG  300
QSKSEANDNV VMENGVEEGE EQSAEVVKRE KNIEVAAQNL SLVSCERSVA ELEKWLEENS  360
GLISIETRNE MKEKLMSLKL AEFDLCFRRV ELITEQGKLV REAMGASGIN ILQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799939.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1U7YL260.0A0A1U7YL26_NICSY; mediator-associated protein 1-like
STRINGXP_009799939.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-21DNA-binding storekeeper protein-related transcriptional regulator