PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799598.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 473aa    MW: 51997.3 Da    PI: 7.6945
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-061049437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    r C+ ++++ + l+C+ ++  lC  C ++ H+       H
  XP_009799598.1 10 RPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 49
                    78***************************99545555555 PP
2zf-B_box25.13.6e-085293342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42
                     ++C++++++++++ C +++  lC++C    H +  H+++p+
  XP_009799598.1 52 SQICDNCGSEPVSIRCATDNLVLCQECDWDAHGScaHDRTPV 93
                    579**************************99*5599998875 PP
3CCT64.14.2e-22425468144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  XP_009799598.1 425 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 468
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.399754IPR000315B-box-type zinc finger
SMARTSM003365.4E-11754IPR000315B-box-type zinc finger
CDDcd000211.27E-71042No hitNo description
PROSITE profilePS501199.5995093IPR000315B-box-type zinc finger
PfamPF006431.3E-55392IPR000315B-box-type zinc finger
CDDcd000217.58E-85493No hitNo description
SMARTSM003361.55593IPR000315B-box-type zinc finger
PfamPF062031.8E-16425467IPR010402CCT domain
PROSITE profilePS5101714.912425467IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSQRSSGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHI RSQICDNCGS  60
EPVSIRCATD NLVLCQECDW DAHGSCAHDR TPVEGFSGCP CASELASAWG LDIEAKKPPT  120
PTHLQPTWNG FLEPCNWMCK DVIPPPSSVL LKDLMVPNAN NNNSGIYSTT REVGRKQNPT  180
CGKQKQVILK QLIELFKRDL ADGVGGGSED LVPKTPNGSS DWQGNVNVTE GSDAVMGGVN  240
QQLEPQSVPF TSLLMMQKPH NSKNSDRMVE GNILSSGNSY VQNTQIWDFN LGQLRSHEQS  300
SSVEADYSES DMAYMMKSYG ELIKGTSLAT SKGLELSGIN RSVAHEDMTA FSNNSNNRGG  360
SQGPATSESN NLPIIKLSSD SGYAKRKCCG VSKDLNFMEQ SIFVGGENTG EEILKADMEL  420
LAKNRGNAMQ RYKEKKKTRR YDKHIRYESR KARADTRKRV KGRFVKANEA PDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754446e-76HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755176e-76HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799598.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_016500065.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1S4CFW60.0A0A1S4CFW6_TOBAC; zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U7Y9130.0A0A1U7Y913_NICSY; zinc finger protein CONSTANS-LIKE 14-like
STRINGXP_009799598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.25e-98B-box type zinc finger protein with CCT domain