PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_009799168.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 174aa MW: 19430.9 Da PI: 7.3021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009799168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.9	2.6e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l XP_009799168.1 11 SCAACKLLKRRCTSNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDKREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQHDLM 105 6********************************************************************************************99 PP DUF260 96 llkee 100 +++++ XP_009799168.1 106 VTRAH 110 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKSNESRSSS SCAACKLLKR RCTSNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP 60 QDKREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYEAKPST 120 SCSFLDYDPL NVNVPSVFVD TSLSGGFLDN FTQNSFGMDN STGSTNEFGQ FPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	8	114	8	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	8	114	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-119	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799168.1	1e-128	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-56	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U7Y7S6	1e-127	A0A1U7Y7S6_NICSY; LOB domain-containing protein 21-like
STRING	XP_009799168.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	8e-54	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]