PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009798992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 383aa MW: 40802.6 Da PI: 9.0555 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.3e-11 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + e+Cr+f+r G C+yG+rCkF H+ XP_009798992.1 4 RKEPCRNFLR-GSCQYGERCKFLHV 27 789*******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 17.215 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-7 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 4 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-8 | 6 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MPPRKEPCRN FLRGSCQYGE RCKFLHVAQQ QPKPNPFGFG SQPSNFQSTN LQQTKSNPYG 60 FGVQNNFQPR GSNDLGPKQS QYKPFENKWT RSTSTNSSSS RQSDNQPVAP NHTCTDSDSC 120 RRQIMEDFNN EKPMWLLTCY GHRKNGPCDV IGDVSYDELR AAAYDDAKRG QSLMSIVERE 180 RNMLNSKAAE FENLLRNYVA PSTSVPNAQS PFPGAAPNAS LSAQSPFPVT TPNASLSAQS 240 PFPGAAPNAS LSAQSSFPPS ASSFSQLGAL LNTGASAAPT NTFGQPSPLG NSVKTSSSSS 300 GANAFSFGNA GSGSFGFGSQ VTSQSHQNPF TPSNISASSE RNPFSTSITS QHFPNPSGGQ 360 LPTTPQGNFS ASVAVSPVNI NLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898775 | 0.0 | AB898775.1 Nicotiana benthamiana NbCG1b mRNA for nuclear pore complex protein CG1b, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798981.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Refseq | XP_009798992.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X3 | ||||
Refseq | XP_016497476.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1 | ||||
TrEMBL | A0A1S4C8P3 | 0.0 | A0A1S4C8P3_TOBAC; zinc finger CCCH domain-containing protein 16-like isoform X1 | ||||
TrEMBL | A0A1U7Y4E6 | 0.0 | A0A1U7Y4E6_NICSY; zinc finger CCCH domain-containing protein 16 isoform X3 | ||||
TrEMBL | A0A1U7YAL3 | 0.0 | A0A1U7YAL3_NICSY; zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
STRING | XP_009798981.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 3e-60 | C3H family protein |