PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009798860.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 344aa    MW: 38817.6 Da    PI: 6.6289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009798860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.6e-27131191259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ gs +pr+YYrCt++   gC ++k+v+rs  + +++e+tY+g+H ++
  XP_009798860.1 131 DDGYSWRKYGQKDILGSIHPRAYYRCTHRntqGCLATKQVQRSVGNSSTFEVTYKGRHSCK 191
                     8***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-27123192IPR003657WRKY domain
PROSITE profilePS5081123.146125193IPR003657WRKY domain
SuperFamilySSF1182903.53E-25129192IPR003657WRKY domain
SMARTSM007746.0E-38130192IPR003657WRKY domain
PfamPF031061.2E-24131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKVKGLEKK KLITELTQGR EFVNQLKKQI GPLASPEECD LLLGKILFSL EKSLSILNLK  60
ALLLEGGNAN STSSCSSISF LGNNNSPKSE VLDSSKDQLV GQNVFSKKRK TPHQWSKQVS  120
ICGTGLESPH DDGYSWRKYG QKDILGSIHP RAYYRCTHRN TQGCLATKQV QRSVGNSSTF  180
EVTYKGRHSC KIAQSEIFSL QNQKRQKHNK KQELSYQRQE QEMVIFNSGP DHKVENFSLT  240
KEEVFTPFSF PPTPLNPIEE TQYFSNSMAP FSSPITSELS TYMSLLTDRN EEFAMENILQ  300
SSESDVTELI STPTSISNSP FGGDWDFSVD FEPSVTFDIE EFFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18131191969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087550.0KJ808755.1 Nicotiana tabacum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798860.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U7YJ600.0A0A1U7YJ60_NICSY; probable WRKY transcription factor 41
STRINGXP_009798860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-37WRKY family protein