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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009797668.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 338aa MW: 38195.5 Da PI: 4.7787 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009797668.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.5 | 2.1e-12 | 170 | 213 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L
XP_009797668.1 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 213
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MDLTQQDLLE ELLAPRRESW STFPSGVNEF FPNGWTFESP FYQNPEFIAL NSSLLGLITP 60
PESNFQCPLI TSPESYPLIL DSFTAPDNID DTVLLPLQIQ EEYNNGAMVE NQEELGIISS 120
DFHGLKEDLN SFSTNDVKVE EANSRIMGVS NVGEKKNKVK KLDGQPSKNL MAERRRRKRL 180
NDRLSMLRSI VPKISKMDRT SILGDAIDYM KELLEKIHTL REDDNVKEEI KDIKFVGNLK 240
ELKPNEALVR KPPKFEVERR NVDTRIEICC GAKPGLLLST VSTLEALGLD VQQCVISCFS 300
DFSLQASCSE AREHRTILSS EDVKQTLFKT AGYGGRCL
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 172 | 179 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 2e-78 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
| GenBank | HG975514 | 2e-78 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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