PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009797633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 373aa MW: 41414.4 Da PI: 5.0775 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 75.5 | 9.6e-24 | 46 | 138 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +f+r+w+e Dei +LqGl+d g+ + d++ fy +++ +s ++ksql+eK+rrL+kKf ++ ++g ++s+ ++hd+ ++ls+++ XP_009797633.1 46 KFHRIWTEPDEIRFLQGLLDD----GSLLFPrDLNIFYTRFSNTMSQPYTKSQLSEKLRRLRKKFWVIYSRLSKGLDMSLLSPHDRALYDLSRQL 136 699*****************8....7766666*************************************************************** PP DUF573 96 Wg 97 W+ XP_009797633.1 137 WH 138 *7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-25 | 47 | 138 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MDSTLPLSQS PTDTASKLPI KRKTTDDPFI SSTATGSDPE KPPPFKFHRI WTEPDEIRFL 60 QGLLDDGSLL FPRDLNIFYT RFSNTMSQPY TKSQLSEKLR RLRKKFWVIY SRLSKGLDMS 120 LLSPHDRALY DLSRQLWHPD FAHTSPFNAG KSKKSNLVGV KVSLLPTIPS APGPGQGLNQ 180 YDTGPGQGSF LPNAPYVSGP DRNKGSGQDP NQDGTVPYQD KLSMDTDPLS VGNSNRITGK 240 DPTHDGVSVS KENVEVGEVN NENNDEIGEF CDEDGKLSEV NVVFESGDVG DKQVRCSCLD 300 GPVRVGIGCG IGEIAAKVVM DVFDECLKDY KNGGFLKEEN LDKFEERWKE QRVAELDVLA 360 RRLRLVLEQS LQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009797633.1 | 0.0 | PREDICTED: uncharacterized protein LOC104244032 | ||||
Refseq | XP_016496498.1 | 0.0 | PREDICTED: uncharacterized protein LOC107815434 | ||||
TrEMBL | A0A1S4C5X9 | 0.0 | A0A1S4C5X9_TOBAC; uncharacterized protein LOC107815434 | ||||
TrEMBL | A0A1U7Y3C5 | 0.0 | A0A1U7Y3C5_NICSY; uncharacterized protein LOC104244032 | ||||
STRING | XP_009797633.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12822 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-18 | DNA-binding storekeeper protein-related transcriptional regulator |