PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797608.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 899aa    MW: 99329.8 Da    PI: 6.474
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   +++
  XP_009797608.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI--WNE 218
                     99*****************************85545444..8************************************************..888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_009797608.1 219 KNQLFLGIRRA 229
                     9999****997 PP
2Auxin_resp117.31.2e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPr+++s+Fvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  XP_009797608.1 254 AAHAAATNSRFTIFYNPRSCPSDFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-21127223No hitNo description
SMARTSM010192.1E-24128230IPR003340B3 DNA binding domain
PfamPF023628.0E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365128230IPR003340B3 DNA binding domain
PfamPF065077.8E-34254337IPR010525Auxin response factor
SuperFamilySSF542775.17E-7760841No hitNo description
PROSITE profilePS5174523.446766850IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MRLSSAGSNQ QSPEGENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
AEAHIPNYPS LAPQLICQLH NVTMHADMET DEVYAQMTLQ PLSPEEQKEA SFLPLDLGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPVQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SIIFIWNEKN QLFLGIRRAN RSQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RSCPSDFVVP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKPLY SLGVGVGWDE STAGERQPRV  360
SLWEVEPLTT FPMYPSPFPL RLKRSWPPGF PALSGMKDDD MVMNPMMWLR DVGDGGTQSI  420
NFQGIGVTPW MQPRIDVPIG GMQMDIYQAM AAGALQDLRS VDPSKQALTS LLQLQQSNGV  480
TNSTSGLLYP QLFQQSQGQT AFLPSMAQGQ SQVQPVSQPH IFQQQMLHQN SSTTIHQQQQ  540
QSPLEQRPPP QQQQAIRQLD SSSQSQQTSL QAFCSTQQES FTDTNVNHST NSIVNPLHSL  600
SGAVTRDEPS QLVSVPRSSS LLSPTGWPPK RVAVDPVLPS ASSQRMSPFI DQPGTPNKNV  660
SQNALSLPTF PGRDCPVGQE GNNDLHNHLL FGFNIDSPSL MQSDMRSLRG VGSDCESANV  720
PFASSNYLSN AGNDFAQNPV MALSGCINVP GFTQTSENAG QESPHNTFVK VYKSGSFGRS  780
LDITKFSSYH ELRSELARMF GLEGLLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVNSV  840
WCIKILSPHD VQQMGKQGLE LLNSVSMSRS SNNSCDDFAN RSESRNMASG IMSVATLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572036651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797608.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U7Y3A00.0A0A1U7Y3A0_NICSY; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]