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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009797499.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
C2H2 |
Protein Properties |
Length: 398aa MW: 44563.4 Da PI: 9.4702 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009797499.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 57 | 77 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ C+k Fs+ L H+r H
XP_009797499.1 57 CHVCNKGFSSGKALGGHMRIH 77
*******************99 PP
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2 | zf-C2H2 | 14.3 | 0.00012 | 120 | 139 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS
zf-C2H2 2 kCpdCgksFsrksnLkrHir 21
+C++Cgk F++ +L H+r
XP_009797499.1 120 TCSICGKNFPSMKSLFGHMR 139
6******************8 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50157 | 9.515 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-8 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.95E-9 | 56 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 57 | 77 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.95E-9 | 114 | 141 | No hit | No description |
SMART | SM00355 | 0.018 | 119 | 141 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 119 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.3E-4 | 120 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.2E-8 | 121 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.068 | 294 | 317 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 77 | 294 | 316 | IPR015880 | Zinc finger, C2H2-like |
Sequence ? help Back to Top |
Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MVDYQDHRVG NETQVWIKLK ISEKDVLKDQ KQVPVEDHEY DEEEVQIPKN INFRRICHVC 60 NKGFSSGKAL GGHMRIHVQA AKKFLSAKKG KRLVHKKRIL DLHGQLVDFD NYNNQLPPPT 120 CSICGKNFPS MKSLFGHMRC HPERAWRGIQ PPVNKNTTCL SKTASASASG EDLSKSVPGW 180 SVTAKRGRKP IADDKEQLND AVHHLMLLAN GNSLESGLTG DRCYYNKHGI PEELEITNSI 240 NSVTSKTEAH EELASHVNEK RRKKVKLRFL GDAISPVSVV NDQNPGIVTP PEKYKCNTRE 300 KSFSTHHALG GHRSSHNKFR MVIQNSNVGT MASSMIDPVN EPAASSSKNV NKNFTPIGPS 360 SSQLTSPGEV NGRRILGFDL NELPPHDDVE YFQFFQFN
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB000454 | 2e-32 | AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds. |