PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796838.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 284aa    MW: 31969.3 Da    PI: 6.6855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05112131120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C  C+k+F+r  n++ H+
  XP_009796838.1 112 FSCAVCNKTFNRFNNMQMHM 131
                     89*****************9 PP
2zf-C2H215.64.6e-05197219123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk F  + + ++H +++
  XP_009796838.1 197 FTCRKCGKNFAVRGDWRTHEKNC 219
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-5109133No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355180160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.99E-6178217No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.663197217IPR007087Zinc finger, C2H2
SMARTSM0035555197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQTHSITYLS SSESGCLETE VEDELSTVLS LGPPGQINLQ KNTTKFHFQS YYNQYSSCGE  60
GVTVALHTDS SGTSSNNNNP SKNKGDNIIS VANNGQYWIP TPAQILVGPT QFSCAVCNKT  120
FNRFNNMQMH MWGHGSQYRK GPDSLKGTKP ASSMLRLPCY CCAEGCKNNI EHPRSKPLKD  180
FRTLQTHYKR KHGAKPFTCR KCGKNFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH  240
VRAFGDGHAP HSENSYYQVE GEEEDEDEDE DEDEDVEAGA ELEY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-171HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796838.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ9FX681e-116ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1U7Y1320.0A0A1U7Y132_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009796838.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-116C2H2-like zinc finger protein