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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009796745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 250aa MW: 29294.2 Da PI: 8.4328 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.4 | 9.2e-33 | 30 | 128 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+L +d++sk++eWLl++a p+i el+++++ + ++ +++++ss + n+ g XP_009796745.1 30 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLSYDQPSKAVEWLLKAATPSISELPSLNAFPDTQQiSEDKRSSVGTNEMDGddeedvd 124 689*************************************************************6666644432222222222222223333333 PP TCP 89 ...k 89 + XP_009796745.1 125 vepE 128 3331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-33 | 31 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.888 | 32 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEMVDLSHKM KMKRLCGWPS NRIVRVSRAS GGKDRHSKVW TSKGLRDRRV RLSVNTAIQF 60 YDLQDRLSYD QPSKAVEWLL KAATPSISEL PSLNAFPDTQ QISEDKRSSV GTNEMDGDDE 120 EDVDVEPELT REHASPSPVR PRVYESHVSF HERNIPYLNN LPSMPDVDAL TRDDDEIRSA 180 MWDESRPAMR VKGMYFPDKA LLIRAVKIYS VRECREMTVR ESTMEEYYKD KLYFLHNLCT 240 RYRKRERQSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796745.1 | 0.0 | PREDICTED: transcription factor TCP3-like | ||||
TrEMBL | A0A1U7YD64 | 0.0 | A0A1U7YD64_NICSY; transcription factor TCP3-like | ||||
STRING | XP_009796745.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-39 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |