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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009796654.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 315aa MW: 35887.6 Da PI: 4.6817 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009796654.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30.5 | 6.7e-10 | 149 | 192 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +i+ +++Y k+L
XP_009796654.1 149 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSIVGDTIDYTKEL 192
589*********************66......9*************8876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MEYYSGNGFL LLALRSDSRE TSLPIEMNDL YYNNGWNYEC FGENAVPIPL PCTTTTTTSS 60
FEDYSFDQNL NNSLISEFYS TQLELTNSSN NWFGTPFTSQ LQDLEVENFA CKLERTESAV 120
TAPTFNIGSL CPEKKVNTKK LNGQPSKNLM AERRRRKRLN DRLSMLRSVV PKISKMDRTS 180
IVGDTIDYTK ELLEKINNLQ EEMELGPNQL SLMSIFKNEK PIEIFVRNSP KFDVERRNID 240
TRVEITCAGK SDLLLSTLTT LDALGLEAQH CVISCFNDFA MQASCFEEME QRGFTNAEDI 300
KQTLFRNAGY VGKCL
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 151 | 158 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975451 | 2e-53 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
| GenBank | HG975524 | 2e-53 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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