PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796500.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 456aa    MW: 49810.8 Da    PI: 8.4147
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.32.6e-39176253178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C vegC+ dls+akeyhr+h+vC+ hsk+p+v++ g e+rfCqqCsrfh+ls+fDe+krsCrrrL++hn+rrrk+q+
  XP_009796500.1 176 CCLVEGCNLDLSSAKEYHRKHRVCHSHSKCPKVIIGGAERRFCQQCSRFHSLSDFDEKKRSCRRRLSDHNARRRKPQQ 253
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.7E-31170238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.616174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-37175256IPR004333Transcription factor, SBP-box
PfamPF031105.6E-30177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEWNVKWDWG DLMMFGSEAC GSLKELQLTD WGVDQEGELD RRSFNLSGFG GSVGGYGSDM  60
GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEP YGCSPPMEAL  120
IGYDGPLTGL KLGKRTVESN SGGINVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPCCLVE  180
GCNLDLSSAK EYHRKHRVCH SHSKCPKVII GGAERRFCQQ CSRFHSLSDF DEKKRSCRRR  240
LSDHNARRRK PQQETIQFNS TRLSSWFYDN SKSMNFVFNN GLLLQSKTTA DSTWGTSEVP  300
KFTITRGLTS KPYRAGSINV QSLVGGIKLP GATKMQTNAS KGTTTEFFSQ GVKENMFSLN  360
MGAAPELPCA LSLLSNKSSS EPESTSIGHP THVNQISITE QVIPENLPLG STDLWQAEQY  420
LLNPRIHALV ANGYSGGSFQ LSKDPFDNFY FNGLMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26168250284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796500.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_009796501.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A1U7YCJ30.0A0A1U7YCJ3_NICSY; squamosa promoter-binding-like protein 2
TrEMBLA0A240EUR70.0A0A240EUR7_TOBAC; Squamosa promter-binding-like protein 15
STRINGXP_009796500.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-49squamosa promoter binding protein-like 2