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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009796478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 20329 Da PI: 10.5622 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5.1e-12 | 67 | 118 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR++ Ns ++ Lr llP + + kK+s +++ ++ +YI +L XP_009796478.1 67 KKLNHNASERDRRKNTNSLYSSLRFLLPAtD---QTKKVSLPATVGRVLKYIPEL 118 6789*************************66...8999**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.443 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-11 | 67 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 67 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.92E-8 | 67 | 123 | No hit | No description |
SuperFamily | SSF47459 | 7.98E-13 | 67 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-6 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MFAVSSPLFS NLGLSLADPT SQELNTIENP DSGTNIPRYH SSSRPSIVHS ESKNFNEFNN 60 GDYRIVKKLN HNASERDRRK NTNSLYSSLR FLLPATDQTK KVSLPATVGR VLKYIPELKK 120 EVERLTQKKE NLTLRSIPKK EYSADFNKQT LRRRIQNSLC HDPEFPPSGI VMAPTRRN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796478.1 | 1e-128 | PREDICTED: transcription factor bHLH101-like | ||||
TrEMBL | A0A1U7Y025 | 1e-127 | A0A1U7Y025_NICSY; transcription factor bHLH101-like | ||||
STRING | XP_009796478.1 | 1e-127 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 7e-30 | bHLH family protein |