PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009796446.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 479aa    MW: 54978.7 Da    PI: 7.8617
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009796446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.6e-541012281128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+
  XP_009796446.1 101 LPPGFRFHPTDEELITFYLASKVFNGTFCG-IQIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 194
                     79*************************877.67***************8888999**************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g+l g+kktLvfykgrapkgekt+Wvmheyrl
  XP_009796446.1 195 tNGALLGMKKTLVFYKGRAPKGEKTKWVMHEYRL 228
                     78899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6397250IPR003441NAC domain
PROSITE profilePS5100559.513101250IPR003441NAC domain
PfamPF023651.4E-27102228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MWGFIVPFNP INTHHHHPLL LILSNPCFLH LFHTFFTLLL LPFLTLVSVP NLFSFLFSFV  60
YIIFHFLTRY YYHLIPSFIM LSMEEILCEL SREDMNNEKG LPPGFRFHPT DEELITFYLA  120
SKVFNGTFCG IQIAEVDLNR CEPWELPEVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG  180
YWKATGKDRE VYSATNGALL GMKKTLVFYK GRAPKGEKTK WVMHEYRLDG DFSYRYSSKE  240
EWVICRILHK IGEKKNPIYQ AAGQNYGYPT SLKTWPSSSF LNTATAAEAA PNPILAETPN  300
PKTTTTTHWQ ESFQISQNSM QSLHNFYLFH HQENDLMKSL FNPINVSQTN LFPINNSVLS  360
SATSFSTSQS TKKYKEDINK NSSLSSFLVS NSKKNEKHQV PLMQANTTMK TEASFSPYSG  420
CYNDQNPMAT NFGMNNSTDW SLVGIEGMHF NGGCTQSQMV LDHMHCPIKI AAESWPLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-5010125020168NAC domain-containing protein 19
3swm_B3e-5010125020168NAC domain-containing protein 19
3swm_C3e-5010125020168NAC domain-containing protein 19
3swm_D3e-5010125020168NAC domain-containing protein 19
3swp_A3e-5010125020168NAC domain-containing protein 19
3swp_B3e-5010125020168NAC domain-containing protein 19
3swp_C3e-5010125020168NAC domain-containing protein 19
3swp_D3e-5010125020168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2553741e-171AB255374.1 Petunia x hybrida PhCUC3 mRNA for CUP-SHAPED COTYLEDON3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796445.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
RefseqXP_009796446.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2
TrEMBLA0A1U7Y3B50.0A0A1U7Y3B5_NICSY; protein CUP-SHAPED COTYLEDON 3-like isoform X1
STRINGXP_009796446.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.13e-98NAC family protein