PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_009795991.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 197aa MW: 22445.3 Da PI: 6.8982

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009795991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.5	1.9e-37	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l ++++ dam+s+++e+++r + PvyG+v+ il l+qql+ + +e XP_009795991.1 10 ACAACKYQRRKCTQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPVYGCVECILYLRQQLQLALQER 104 7**********************************************445569********************************999999 PP DUF260 95 allkee 100 +++ ++ XP_009795991.1 105 EYVYAQ 110 887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.13	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-35	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTKGETSRPA CAACKYQRRK CTQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG 60 DDQKADAMKS IIFESDMREK FPVYGCVECI LYLRQQLQLA LQEREYVYAQ LAIYRQQHVG 120 LSSSENNSVG NGIMTAPFFS SDSESSQGII YPDFDKHNSL AYPTSSHVFR LGIQEQLEVS 180 RDFESLTLFN STLVNDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	11	120	12	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	11	120	12	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795991.1	1e-147	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	7e-35	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1U7Y216	1e-146	A0A1U7Y216_NICSY; LOB domain-containing protein 27-like
STRING	XP_009795991.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-34	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]