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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009795428.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 327aa MW: 36159.6 Da PI: 6.9253 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 29.4 | 1.4e-09 | 170 | 217 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq
XP_009795428.1 170 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 217
8*************************9....89999***************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 2.00E-9 | 164 | 221 | No hit | No description |
| SuperFamily | SSF47459 | 3.27E-15 | 164 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.634 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 166 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.4E-7 | 170 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 7.2E-9 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 327 aa Download sequence Send to blast |
MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP PPPIFPSDAA 60 LIDRAFKFSV FAAAAGISPE SNSTLSNSGS KSLLVKQEPL DSELNQNSSP ITVSNPTVNQ 120 KTTKRKEREK KVKETSSKKG KKSTNNTSED DAEKLPYVHV RARRGQATDS HSLAERARRE 180 KINARMKLLQ ELVPGCNKIS GTAMVLDEII NHVQSLQRQV EFLSMRLAAV NPSVDFNLDN 240 LFAPERSGSH VESNLPDMIV PPIWADGQTS GNRNQYQHLW HLEGFHQPVW GRVEDNSSFI 300 TPENSLLTYD SSANSASLHP NQLKMEL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009795428.1 | 0.0 | PREDICTED: transcription factor bHLH48-like isoform X1 | ||||
| TrEMBL | A0A1U7XWW1 | 0.0 | A0A1U7XWW1_NICSY; transcription factor bHLH48-like isoform X1 | ||||
| STRING | XP_009795428.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4029 | 23 | 42 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G57800.2 | 1e-66 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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