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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009794990.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
HSF |
Protein Properties |
Length: 254aa MW: 29864.1 Da PI: 8.9665 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009794990.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 116.1 | 2.2e-36 | 22 | 114 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96
Fl+k+y++++d++ ++++sw en ++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgFkk+ ++ eF++++Fkkg+k+ll+k
XP_009794990.1 22 FLTKTYQLVDDQSSNHIVSWGENDTTFVVWKPLEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPDR---------CEFSNENFKKGQKHLLCK 107
9*****************************************************************99.........67**************** PP
XXXXXXX CS
HSF_DNA-bind 97 ikrkkse 103
i+r+ks+
XP_009794990.1 108 IQRRKST 114
****986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MSSSEMISTV QDCQRAIMAA PFLTKTYQLV DDQSSNHIVS WGENDTTFVV WKPLEFAKDL 60 LPNYFKHNNF SSFVRQLNTY GFKKIVPDRC EFSNENFKKG QKHLLCKIQR RKSTTQQLHH 120 LKPYHENITK NILYQPKTQN NPSTDDFLLL TLTQDNQRLR KRNNLLLSEL AHMKNLYNNI 180 IYFIQNYVKP VDQKSCLFLL NEGLNLRVND HRHDHQVNIE DEEPKSSSVK LFGVSLCGKK 240 RLHHQLIDQE VLEC
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5d8k_B | 2e-21 | 22 | 116 | 5 | 110 | Heat shock factor protein 2 |
5d8l_B | 2e-21 | 22 | 116 | 5 | 110 | Heat shock factor protein 2 |
5d8l_D | 2e-21 | 22 | 116 | 5 | 110 | Heat shock factor protein 2 |
5d8l_F | 2e-21 | 22 | 116 | 5 | 110 | Heat shock factor protein 2 |
5d8l_H | 2e-21 | 22 | 116 | 5 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975450 | 7e-59 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
GenBank | HG975523 | 7e-59 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |