PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794498.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 351aa    MW: 37966.7 Da    PI: 8.1616
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.99.4e-711252803153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstkl 91 
                     +g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++      +++++  +++ +++++s+l++t+l
  XP_009794498.1 125 VGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHNQQQQtqqlslRADSNIIPKRPRENTSSSLACTRL 219
                     7899*****************************************************99998888566666444444444446789999****** PP

          DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +  +s  e+  + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
  XP_009794498.1 220 PAISSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 280
                     *99998777665.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.8E-68127280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26129171IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-28231279IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGNKEQEQ EQDQLATNSF LLFKNEEIYN KGFELWQQYY QLHQQRAQTP  60
QHQVQEMDFS VGVGPSNNRR IISGSSSSSG NNNIVGDDNN NNNNHNYSNS FRVMRATGGS  120
SSSGVGGMNC QDCGNQAKKD CPHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLAA  180
LQQHNQQQQT QQLSLRADSN IIPKRPRENT SSSLACTRLP AISSGLEVGG HFPAEVSSQA  240
VFRCVKVSAI DDAEDQFAYQ TAVNIGGHLF KGILYDQGPE GRYSGGGGES SAGSGAAQQA  300
LNFITGATTS TTAAAATSHQ QQHGTMFDPS VYPTPINAFM AGTQFFPPPR P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4110328e-41AM411032.1 Trifolium pratense AFLP fragment rc0085.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794498.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A1U7XU900.0A0A1U7XU90_NICSY; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009794498.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-61Lateral root primordium (LRP) protein-related