PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794073.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 600aa    MW: 66839 Da    PI: 8.2437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32211267259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g Hnh+
  XP_009794073.1 211 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 267
                     8****************************************.***************8 PP
2WRKY104.74.9e-33415473159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ k v++tYeg+Hnhe
  XP_009794073.1 415 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLKSVITTYEGKHNHE 473
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27206268IPR003657WRKY domain
SuperFamilySSF1182904.05E-25208268IPR003657WRKY domain
SMARTSM007743.9E-36210268IPR003657WRKY domain
PfamPF031061.8E-25211267IPR003657WRKY domain
PROSITE profilePS5081122.814211269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-36400475IPR003657WRKY domain
SuperFamilySSF1182901.83E-28408475IPR003657WRKY domain
PROSITE profilePS5081137.321410475IPR003657WRKY domain
SMARTSM007744.0E-38415474IPR003657WRKY domain
PfamPF031067.8E-26416473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MERNIGEPTD DWNSQIVGNL DSETMLDTQE SDVKIEERSG NTENGSLFPN NNNKRSSIAE  60
RRAAKCGFNA STISIARFRV TTTSMPEMSP PTARPTFLTI PPGLTPAALL DSPVMLPNSL  120
APQSPTTGSF HFSNINQENR MKSTPQIARD HFEFPVESPK ATALKNCSRE TNVGQNMSCI  180
GLTNIHESGN CTRRANQYEQ RSNNITPNGS DDGYTWRKYG QKHVKGSEFP RSYYKCTQQN  240
CPVKKKVERS PDGQITEIVY KGAHNHHKSQ PPRRATMSST AYGLGEMSEG NIGGSNSWQF  300
GRNKDVRAPS GLDRTSSASV LTDVSDSLML NYQNTNMNAF ESATPEPSST LASRDDEDED  360
RATEGSTSLG DDVDDYAFDH KRRRREFYSA ETSLSSRTAR EPRVVVQIES EIDILDDGYR  420
WRKYGQKVVK GNPNPRSYYK CTSAGCPVRK HVERAPDNLK SVITTYEGKH NHEVPSANKT  480
NCAISGNQAL TSTSKPHKVS NSGMQVQDCN RKPFDYVRIG AASSIYDLKF PTNLRSSPLS  540
YASFLLSPNP LQMPEFPLPM SLPFGPNIVP PLAGFHFNAG EDQKYIYSRQ QQKFETSERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33211476878Probable WRKY transcription factor 4
2lex_A2e-33211476878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR5596780.0KR559678.1 Nicotiana benthamiana WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794073.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_016463661.10.0PREDICTED: WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ68e-91WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1S3ZH650.0A0A1S3ZH65_TOBAC; WRKY transcription factor SUSIBA2-like
TrEMBLA0A1U7XT170.0A0A1U7XT17_NICSY; probable WRKY transcription factor 4
STRINGXP_009794073.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-85WRKY DNA-binding protein 34