PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 379aa MW: 44219.4 Da PI: 7.5491 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.3 | 4.9e-08 | 26 | 62 | 55 | 91 |
FAR1 55 raetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +++ +Cka+l ++++g w+v+k++++HnH+l p XP_009793957.1 26 FTTKTNNCKARLATVLDDSGCWRVSKVVHDHNHDLLP 62 3456668***************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.9E-6 | 25 | 62 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-21 | 154 | 224 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MENEFTDEDV VVGPISGMTR IRRIKFTTKT NNCKARLATV LDDSGCWRVS KVVHDHNHDL 60 LPSVSHLMAG HGSVCDSLKR DLVAHDRSSI RPSKNIRLDE VQRGGPQNLG CTPKDCRNYI 120 LKSRNFEMQE GDAQSLLNFF REIQAAYEQF HDAICFDTTY LVNQYNMPCA SFVGINHHRQ 180 SILLGCALMS HEDIDSYKLV FRTWLDAMGN VHPDAIITDQ CQSISGVRPS KIARAEFKSM 240 VLDSITVEVF ERKWAEYISR YNLHIRNWFN KLYSEKEKWV PVYLDMYFWG GMLFTQRSEG 300 MHAFFDGYIT RQSTFRMFVH QYELAIRAKH EKELEAEYRS KGFQIVCESM FKWEQQTIQC 360 YTRTIYEIFQ DTAKKIVSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793957.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7XPG3 | 0.0 | A0A1U7XPG3_NICSY; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_009793957.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1301 | 9 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-56 | FAR1-related sequence 5 |