PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 47249.6 Da PI: 8.5924 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.5e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_009793876.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 40.1 | 5.9e-13 | 93 | 118 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_009793876.1 93 GQPECQYYLKTGTCKFGATCKFHHPK 118 5799********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_009793876.1 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164 689********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 2.9e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_009793876.1 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.8e-13 | 339 | 365 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_009793876.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 139 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-9 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 341 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 343 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPTYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQAV VSVPGFAYSG QMGSISSPEG 240 QQQTAGNSQV YGTSRSGDAV NMGSQGVTSP YRPASVPMGY YALQGENVFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SISASSPTDA PAVQRLLGSS SGTSALTLTS EGLVEAVSTK PRRLSLSDTR 420 KMPPGDNNID REG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793876.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_016438819.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3XG87 | 0.0 | A0A1S3XG87_TOBAC; zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1U7XW87 | 0.0 | A0A1U7XW87_NICSY; zinc finger CCCH domain-containing protein ZFN-like | ||||
STRING | XP_009793876.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |