PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009793670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 545aa MW: 60938.4 Da PI: 6.5825 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81 | 1.3e-25 | 196 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_009793670.1 196 KARVVWTVDLHQKFVKAVNQI-GFDKAGPKKILDLMGVPWLTRENVASHLQKYRL 249 68*******************.********************************8 PP | |||||||
2 | Response_reg | 81.5 | 2.7e-27 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_009793670.1 25 VLVVDDDPTWLKILEKMLKKCSY-EVTVCGLAREALNLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 117 89*********************.***************999999**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_009793670.1 118 ACDYLLKPIRMKELRN 133 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.13E-36 | 22 | 147 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.8E-45 | 22 | 155 | No hit | No description |
SMART | SM00448 | 2.5E-32 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.852 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.2E-24 | 25 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.70E-31 | 26 | 139 | No hit | No description |
PROSITE profile | PS51294 | 9.761 | 193 | 252 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-18 | 194 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 194 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-22 | 196 | 249 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 198 | 248 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MMENSKTTAG FSSPRSDNFP AGLRVLVVDD DPTWLKILEK MLKKCSYEVT VCGLAREALN 60 LLRERKDGFD IVISDVNMPD MDGFKLLEHV GLEMDLPVIM MSVDGETSRV MKGVQHGACD 120 YLLKPIRMKE LRNIWQHVLR KRMHEARDIG NHEMDQFDEV WMLNGTELLS GKKRKDFDNE 180 KEISDSRCVD SSSMKKARVV WTVDLHQKFV KAVNQIGFDK AGPKKILDLM GVPWLTRENV 240 ASHLQKYRLY LTRLQKENEV KASFCGMKHP NVSSKENSPQ YPVDVCADVI NDKCSGVSGD 300 KAIVQNGKAN IYESKVKGVV SMPVAEPRSV VGDNFGSKTS LSDSFALINT DVKSLNVPTP 360 YCFTGEAPQP QYKQDFKPRF PSCTQPTCSL NFVPSHEVRD RVSSKENKPS FFKSRSGVGK 420 LSALEAIQPV SHQINFHALE QIPSTTWSMT SQNVDQNLVN GLQSSPGNLT LGSGSVVASL 480 GEDASIQGEC FPAYYGLRNI QQFDYSDPQT ISGVPTCLYD TLRFDYEYPN DSLEGIVLDQ 540 GLFIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-18 | 192 | 254 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-116 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-116 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793670.1 | 0.0 | PREDICTED: two-component response regulator ARR11 | ||||
Swissprot | Q5N6V8 | 1e-126 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A1U7Y4E7 | 0.0 | A0A1U7Y4E7_NICSY; two-component response regulator ARR11 | ||||
STRING | XP_009793670.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6788 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-117 | response regulator 11 |
Publications ? help Back to Top | |||
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