PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009793082.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 969aa    MW: 108604 Da    PI: 8.013
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009793082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.48.8e-56201353117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL n++k+ lt e++ rp+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqr
  XP_009793082.1  20 QEtQHRWLRPAEICEILRNHHKFYLTPEPPVRPPGGSLFLFDRKVLRYFRKDGHQWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGENNENFQR 114
                     4449******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     r+yw+Lee+le+ivlvhy+ev
  XP_009793082.1 115 RSYWMLEEKLEHIVLVHYREV 135
                     ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.21915141IPR005559CG-1 DNA-binding domain
SMARTSM010766.7E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4922134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-7418507IPR013783Immunoglobulin-like fold
CDDcd001020.00147419507No hitNo description
PfamPF018331.0E-5420505IPR002909IPT domain
SuperFamilySSF812967.77E-17420506IPR014756Immunoglobulin E-set
SuperFamilySSF484034.04E-17579713IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-17610717IPR020683Ankyrin repeat-containing domain
CDDcd002041.25E-16613711No hitNo description
PROSITE profilePS5029717.29619723IPR020683Ankyrin repeat-containing domain
PfamPF127967.4E-7625714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06652684IPR002110Ankyrin repeat
SMARTSM002484.6E-4652681IPR002110Ankyrin repeat
SMARTSM00248960691720IPR002110Ankyrin repeat
SuperFamilySSF525401.94E-8801878IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.39826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.59827856IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024829847IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633850878IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5853871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.144931959IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MADTRRYLSN QPLDLEQVLQ ETQHRWLRPA EICEILRNHH KFYLTPEPPV RPPGGSLFLF  60
DRKVLRYFRK DGHQWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGENNE NFQRRSYWML  120
EEKLEHIVLV HYREVIESYR VGASRLQPIH PGQLLENPSS SPCFVSGLIV QESHTSSPSS  180
VDWKEQALSS ELYTGDSKGN EVNPLLVPAS GHFLPITSSF STEKPTGLVE FSRDNFQLNP  240
QFGSFVSIDA QSSDRNLNVT LQKKFYSGYL NVADLLSSKL TYARLDGGRA VKDVANSRNR  300
LTITSGEVLE ENIHLAPAQI QNISSSQTVV TPDAAVQNSS LEGRLNSDEA GSLKKLDSFG  360
RWMDREIAVD GNESLLASDS GNYWNTLDNG DKEVARLSCH MQLDTNSLGP FLSQEQLFSI  420
SDFAPDWAYS GVETKVLIIG TFLGHGKHPT SQKWSCMFGE VEVSAELLTQ SIIRCEVPSH  480
SPGRVPFYVT CSNRLACSEV REFEYREKSS ELALALRPSD EVRLQVRLAK LLYSGLNKKF  540
LDCSSTECER GKLKTLLCSL KCNIGNASES LEDLLAIIEG NHINFRDTLI QSFMKDKFYE  600
WLVSRAHEED KGPNILDDEG QGVIHLVASL GYEWGLVLLT AAGINPNLRD ARGRTALHWA  660
AHYGREDMVI ALVKLGVAVC AVDDPTAAFP GGQTAADLAS SGGHKGVAGY LAESELTAHL  720
QSLAINNNAL DSICAGLEAE KAFESAAQEV VPLNGTIHDD ISLKGSLASV RKSAHAAALI  780
QAAFRARSFH QRQLRESRND VSEASVDLVA LGSLNKVQKV NHFEDYLHPA AIKIQQKYRG  840
WKGRREFLKI RNRIVKIQAH VRGHQVRKQY KKFVWSVSIV EKAILRWRRK KPGLRGFQPE  900
KTSQKELPEF EKNDEYEYLS IGRKQKFAGV QKALARVQSM VRHPEARDQY MRLVAKFDSF  960
KLDDGGSSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793082.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
TrEMBLA0A1U7XM110.0A0A1U7XM11_NICSY; calmodulin-binding transcription activator 1-like isoform X1
STRINGXP_009793082.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.30.0ethylene induced calmodulin binding protein