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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009792963.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
MYB |
Protein Properties |
Length: 220aa MW: 26289.7 Da PI: 8.304 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009792963.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT++Ed++lv +vk++G ++W+ a+ g++Rt+k+c++rw +yl
XP_009792963.1 8 RGPWTEQEDLQLVFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55
89********************************************97 PP
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2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
XP_009792963.1 61 RGKMTPQEERLVLELHCKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 106
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MVQEEIRRGP WTEQEDLQLV FYVKLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLNPDLK 60 RGKMTPQEER LVLELHCKWG NRWSRIARKI PGRTDNEIKN YWRTHMRKKA QEQRKKATSI 120 SPSSSFSNCS SSSITHEENE RNFYDTGGIE QLQVEEQKKV NDQEQAGESM KVYSMDEIWK 180 DIELLEENET INKPIMGSIS PLWDYCPDPM WKDFDWNTFR
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]
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