PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792889.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 415aa    MW: 48585.1 Da    PI: 9.4418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46e-141794998
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +k+g l +p  f+ ++ +g    ++   +  + g++W +k+  ++++    +++GW eF+++++L+ gD++vF+++g++ef  +v++f 
  XP_009792889.1 17 PGFKNG-LKIPVGFL-KYlKGH--DNV-HAILRRGGKKWVMKV--NGRR----MEDGWTEFAEEHDLQLGDMLVFRHEGNMEF--NVSIFG 94
                    556666.********.664433..233.3456679********..8887....89***********************99999..999986 PP
2B349.95.8e-16158243697
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++ l++  l++p++fa ++ +++++  t++++d + rsW+  l    +++ +++++GW eF+ ++ LkegD v+F+ ++ +++++ +k++
  XP_009792889.1 158 IKPYCLTKYFLRIPRQFALDNRLNNRK-CTIIMRD-ELRSWTCSL--HTNGN-TYIGRGWHEFCTDKCLKEGDRVMFEIVS-NGETPIFKFH 243
                     6788889999***********999765.5999999.78*******..66654.579**********************887.6666788776 PP
3B355.41.1e-17302386594
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++++ l+++ + +p++fa ++ +++++   +++   + rsW++ l    +s+ +++++GW+eF+ ++ LkegD v+F+ +++  +++v+
  XP_009792889.1 302 TIRPYCLSKHFVAVPRQFALKNRLNNRKC--MIIIRNERRSWTFSL--YTSSNNTYFGRGWREFCIEKCLKEGDRVMFEIISNG-ETPVF 386
                     567899999*************9997665..66677799*******..999999*************************99853.33443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-21498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-206102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21896IPR003340B3 DNA binding domain
CDDcd100176.81E-141093No hitNo description
SMARTSM010198.6E-181196IPR003340B3 DNA binding domain
PfamPF023621.1E-101993IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-17151242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-17153242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.223153245IPR003340B3 DNA binding domain
SMARTSM010191.9E-13153246IPR003340B3 DNA binding domain
PfamPF023624.8E-14158244IPR003340B3 DNA binding domain
CDDcd100172.24E-12158244No hitNo description
CDDcd100173.45E-13292388No hitNo description
Gene3DG3DSA:2.40.330.103.8E-21295389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20296389IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-15298392IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239298391IPR003340B3 DNA binding domain
PfamPF023627.8E-16302386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MKKVPPKKSH FFKPILPGFK NGLKIPVGFL KYLKGHDNVH AILRRGGKKW VMKVNGRRME  60
DGWTEFAEEH DLQLGDMLVF RHEGNMEFNV SIFGSSCCER EYAAYMQEDE DEEEETPKKF  120
DLEEKVKANI RTSGKAFPNA EAANKGMHLS PSHLICTIKP YCLTKYFLRI PRQFALDNRL  180
NNRKCTIIMR DELRSWTCSL HTNGNTYIGR GWHEFCTDKC LKEGDRVMFE IVSNGETPIF  240
KFHDLRGNPS HHPEVKKNNF DAKRISDEEK PKANIKASDK AFPNVEAAEK DKHLTHSHFI  300
CTIRPYCLSK HFVAVPRQFA LKNRLNNRKC MIIIRNERRS WTFSLYTSSN NTYFGRGWRE  360
FCIEKCLKEG DRVMFEIISN GETPVFVFQG KFLFQSLCLK FHPVFYCLII YIMRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792889.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A1U7Y0W90.0A0A1U7Y0W9_NICSY; B3 domain-containing protein REM7-like
STRINGXP_009792889.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-56B3 family protein