PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009792718.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 403aa MW: 44875.8 Da PI: 9.5776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009792718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	347	366	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L++H++++ XP_009792718.1 347 CSQCGKPF-KPEKLHTHMKSC 366 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	1.8E-40	15	167	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MEAQTQGGAE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP 60 ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE VSKDVSCGEK GVLATMQKDQ 120 TNQEDHIQDP FMDSSKKTPS EIEEESQNIA SETSTLTTDS PKLQEEEEKD SENKTKPEKV 180 NNFENNSSSF SSSSSSFGSK KTKKKTEDHV KENGEKITTT PSSEKPSKNP SFDKSRSYSN 240 GASSIFRNLI TCGAVDTNDS GIIPIRKNRP SFSSSGEKAV SFSSEICKAE KVGGSQRIFG 300 TAWNQQHQHT NGRKSCDGVY SSSKNKNEFG SRRSVSANYK PVNGPNCSQC GKPFKPEKLH 360 THMKSCKGMK ALAKGANSVT SATEKTSKDA SKVDSVSGTY LTH

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MEAQTQGGAE VRRLHIIYFL SRKGRIEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE VSKDVSCGEK GVLATMQKDQ  120
TNQEDHIQDP FMDSSKKTPS EIEEESQNIA SETSTLTTDS PKLQEEEEKD SENKTKPEKV  180
NNFENNSSSF SSSSSSFGSK KTKKKTEDHV KENGEKITTT PSSEKPSKNP SFDKSRSYSN  240
GASSIFRNLI TCGAVDTNDS GIIPIRKNRP SFSSSGEKAV SFSSEICKAE KVGGSQRIFG  300
TAWNQQHQHT NGRKSCDGVY SSSKNKNEFG SRRSVSANYK PVNGPNCSQC GKPFKPEKLH  360
THMKSCKGMK ALAKGANSVT SATEKTSKDA SKVDSVSGTY LTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	8e-35	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792716.1	0.0	PREDICTED: protein UPSTREAM OF FLC isoform X1
TrEMBL	A0A1U7XSW4	0.0	A0A1U7XSW4_NICSY; protein UPSTREAM OF FLC isoform X1
STRING	XP_009792716.1	0.0	(Nicotiana sylvestris)