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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009792225.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
M-type_MADS |
| Protein Properties |
Length: 215aa MW: 24135.8 Da PI: 10.4003 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009792225.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 64.8 | 9.1e-21 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+ +sn vtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ +
XP_009792225.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGHKVFSF 63
6678999********************************9999877 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MARKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPGHKV 60
FSFGHPNVES IIDRFLTRNI PSSTTANFSS TTCQLVEAHR NANVRELNKQ LMEILNQLEF 120
EKKHEVELVK INKAKIGKNW WERPVNELGH AELEQLKLGM EELKKXVQMQ KIFIESSNTP 180
AFFLGASSSN GGQADVKNIT GLGLSMATHG HTIFP
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3kov_A | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 4e-16 | 8 | 98 | 1 | 86 | Myocyte-specific enhancer factor 2A |
| 5f28_A | 5e-16 | 8 | 98 | 2 | 87 | MEF2C |
| 5f28_B | 5e-16 | 8 | 98 | 2 | 87 | MEF2C |
| 5f28_C | 5e-16 | 8 | 98 | 2 | 87 | MEF2C |
| 5f28_D | 5e-16 | 8 | 98 | 2 | 87 | MEF2C |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
| Publications
? help Back to Top |
- Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Figueiredo DD,Batista RA,Roszak PJ,Köhler C
Auxin production couples endosperm development to fertilization.
Nat Plants, 2015. 1: p. 15184
[PMID:27251719] - Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
Auxin production in the endosperm drives seed coat development in Arabidopsis.
Elife, 2017.
[PMID:27848912] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
Plant Signal Behav, 2017. 12(8): p. e1339000
[PMID:28613109] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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