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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009792071.1 |
Common Name | NsMADS1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
MIKC_MADS |
Protein Properties |
Length: 245aa MW: 28403.9 Da PI: 9.024 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009792071.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.1 | 6.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
XP_009792071.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59
79***********************************************96 PP
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2 | K-box | 108 | 1.1e-35 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
++++ +++++++ s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+k
XP_009792071.1 76 AERQLTATDHETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSK 170
66777788888899********************************************************************************* PP
K-box 97 klee 100
+++e
XP_009792071.1 171 QVKE 174
*986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-34 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-41 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 5.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-29 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.84 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010154 | Biological Process | fruit development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD 60 SCMERILERY ERYSYAERQL TATDHETPGS WTLEHAKLKA RLEVLQRNQR HYAGEDLDSL 120 SMKELQNLEH QLDSALKHIR SRKNQLMHES ISELQKKDKA LQEQNNNLSK QVKEREKELA 180 QQTQWEQQSH DHLNSSSFVL TQPLSSLHLG EAYPTAGDNG EVEGSSRQQQ QNTVMPPWML 240 RHLNG
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6byy_A | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6c9l_A | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-22 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF068725 | 0.0 | AF068725.1 Nicotiana sylvestris MADS-box protein MADS1 (NsMADS1) mRNA, complete cds. |