PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791887.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 285aa    MW: 30762.4 Da    PI: 4.4275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038260281323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C+ C+++F +   L++H +  H
  XP_009791887.1 260 CKTCNRTFGSETALESHSKAkH 281
                     *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094258285IPR007087Zinc finger, C2H2
PfamPF139127.4E-6260282IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFWGAEVKS GQPLTVQPGD DMVLHLSQAS LGEAKKDKGS EPVCLSVNVD GKKLVLGTLN  60
LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPYE QEEDEEDEDE SDEEIPLTLA  120
NIGKAEAKAS ANDSTSGKQK VKIAEPSKDA KADDEDDSSD EDDTSEDEED SEMGEDEDDS  180
DEDKSDEETP KKAEPSKKRP ADSATKTPAP DKKAKFATPQ KADGKKGAVH VATPHPSKQA  240
GKTPGNKSNQ TPKSGGALAC KTCNRTFGSE TALESHSKAK HSAGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9031760.0FJ903176.1 Nicotiana tabacum cultivar Xanthi type 2 histone deacetylase c (HD2c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791887.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ6V9I61e-112HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A1U7XIK50.0A0A1U7XIK5_NICSY; histone deacetylase HDT1-like isoform X1
STRINGXP_009791887.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]