PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 282aa MW: 32969.8 Da PI: 8.4644

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.3	2e-19	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd l+++++++G g+W++ ar+ g++Rt+k+c++rw++yl XP_009791846.1 34 RGPWTAEEDFTLINYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 81 89********************************************97 PP
2	Myb_DNA-binding	49.1	1.3e-15	87	130	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++ XP_009791846.1 87 RGNITLEEQLVILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.764	29	85	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-31	31	128	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-16	33	83	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-17	34	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-23	35	88	IPR009057	Homeodomain-like
CDD	cd00167	2.90E-12	36	81	No hit	No description
SMART	SM00717	1.4E-13	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.21	86	136	IPR017930	Myb domain
Pfam	PF00249	4.6E-14	87	130	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-22	89	135	IPR009057	Homeodomain-like
CDD	cd00167	6.76E-10	91	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDHHHVKVGL SRGGNYNKNN NHQQQHEEDM DLRRGPWTAE EDFTLINYIA KHGEGRWNSL 60 ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLVILE LHSRWGNRWS KIAQHLPGRT 120 DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPTL VERIQAAATT NSNQVTINPN 180 NNNAVNKPRM SENYSISSAA SSENSFGTPV SDLTDCCYNY PPVITNNQQD YFYQTTQLRE 240 SLTIPTGLEF HTAMDQQNMS QWMDGGNFSD NLWNIEDMWF IQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-26	22	128	15	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791846.1	0.0	PREDICTED: transcription factor MYB108-like
Refseq	XP_016511320.1	0.0	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	1e-91	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1S4DCZ6	0.0	A0A1S4DCZ6_TOBAC; transcription factor MYB108-like
TrEMBL	A0A1U7XQE9	0.0	A0A1U7XQE9_NICSY; transcription factor MYB108-like
STRING	XP_009791846.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	3e-87	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]