PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791791.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 386aa    MW: 43282.7 Da    PI: 6.9915
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791791.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.4e-06144164526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C+ Gd C FaHg
  XP_009791791.1 144 ACPEFRK-GNCRKGDGCEFAHG 164
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-4139165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4143166IPR000571Zinc finger, CCCH-type
SMARTSM003565.5174197IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.648174198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMIGERNHPY PTVHIPPWSF GDNQTDNMHL TLSPSGNATS SPSFSAASGE DYSMFLQNDT  60
GLKALQRYLP FNDVVGDFDF EYGEGKDIDL PVDAYSCDQF RMYEFKVRKC ARGKSHDWTE  120
CPYAHPGEKA RRRDPRKYHY SGTACPEFRK GNCRKGDGCE FAHGVFECWL HPARYRTQPC  180
KDGLNCKRRV CFFAHSPEQI RVLSPRADSF DGSPSISRYG FEGKNLHFIT SPESGSPPCE  240
SPPMSPMTQT TNSVSSLSRS LGSNYSINEM VASLRQLQLN KVKSMPSSWN LQMGSPVLGS  300
PRIPVNRPGF CSLPSTPTRA FNRPGVCCFD LCEEEPVMER VESGRDLRAK MFEKLSKENP  360
LDGMVPDPIP SEATNPDVGW ISELIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791791.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-123C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1U7XQ970.0A0A1U7XQ97_NICSY; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009791791.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-119C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]