PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 274aa MW: 31228.6 Da PI: 6.5226

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009791350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.6e-18	96	145	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a+++++g XP_009791350.1 96 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALAIKG 145 69**888.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.8E-33	96	159	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	96	145	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.43E-21	96	154	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.314	96	153	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-31	96	154	IPR001471	AP2/ERF domain
CDD	cd00018	2.43E-31	97	154	No hit	No description
PRINTS	PR00367	3.6E-10	97	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-10	119	135	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEDQEQRINL EIRADYHRRG FFSNSTSNVL NSPSNTTSSS SSSSSSSFSS SNELIRKDYD 60 SKKSSRKVQE LIKINENIGE EKKKRKKNED DNKHPTYRGV RKRSWGKWVS EIREPRKKSR 120 IWLGTYPTAQ MAARAHDVAA LAIKGDSAYL NFPHFAHLLP CPTSTSPKDI QTAAAKAATI 180 TFPEENEEIR AETSRVELPS CHSSTNLFLE NIKELPNSLS REDDDTFFDL PDLSIDVVDQ 240 NDRYWCTMST WQQPVGADIT GFRLEEPFLW ECPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	94	154	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	86	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791350.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF039
Refseq	XP_016441653.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	8e-55	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S3XP06	0.0	A0A1S3XP06_TOBAC; ethylene-responsive transcription factor ERF039-like
TrEMBL	A0A1U7XXU7	0.0	A0A1U7XXU7_NICSY; ethylene-responsive transcription factor ERF039
STRING	XP_009791350.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	2e-49	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]