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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11282.6 Da PI: 9.6434 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 6 | 53 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT++ +++ +a + + ++ +W+ a+ +g g+t++++k ++ k+ XP_009791349.1 6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKTHYEKL 53 7********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.644 | 1 | 54 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-7 | 3 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-12 | 5 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 5 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 6 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-5 | 6 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKTHY EKLVEDIKRI 60 ESGQVPLPKY NKPNGGHNNK GYMFNDEEQR LRYLKLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-27 | 3 | 97 | 7 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791349.1 | 8e-68 | PREDICTED: protein RADIALIS-like 5 | ||||
Refseq | XP_016502449.1 | 8e-68 | PREDICTED: protein RADIALIS-like 5 | ||||
Swissprot | Q9SIJ5 | 7e-29 | RADL2_ARATH; Protein RADIALIS-like 2 | ||||
TrEMBL | A0A1S4CNC0 | 2e-66 | A0A1S4CNC0_TOBAC; protein RADIALIS-like 5 | ||||
TrEMBL | A0A1U7XWN9 | 2e-66 | A0A1U7XWN9_NICSY; protein RADIALIS-like 5 | ||||
STRING | XP_009791349.1 | 3e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-31 | RAD-like 1 |
Publications ? help Back to Top | |||
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