PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 585aa MW: 64156.3 Da PI: 5.7124 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.9e-23 | 118 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k+ltpsd+++ g +++p+ +a+++ +++ + l+++d +g We+++iyr++++r++lt+GW++Fv++++L +gD+ vF ++ XP_009791106.1 118 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvAEPPVQ--NLSIRDIHGCIWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSAVFV--RKi 208 89*********************999*****98666667..6************************************************..566 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ XP_009791106.1 209 NTGELYVGVRRA 220 9999******97 PP | |||||||
2 | Auxin_resp | 81.3 | 2.2e-27 | 264 | 347 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++Fev +Pra++++Fvv++e ve++ +v +++G+R+kma+etedss++ + +Gtv++v+ + W++S+Wr+L+ XP_009791106.1 264 AAEMAARGMAFEVSCYPRAGWADFVVRAEAVEASSTVFWTIGTRVKMAVETEDSSRTACfQGTVSSVNLPRSGPWRGSPWRMLQ 347 6889999***************************************************99**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.2E-28 | 108 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-31 | 109 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.96E-21 | 117 | 219 | No hit | No description |
Pfam | PF02362 | 9.7E-21 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-18 | 118 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 118 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-24 | 264 | 347 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MPPSTTAVPA VSNDVDPTVW KAIAGNSVQI PTVGTRVYYF PQGHAEHANC GSPIFLSSLI 60 PPFILCRVLS VRFLADSVTD EAYAKIFLLP INQSEDNNNV AVNMNGDEED AENEVVSFVK 120 ILTPSDANNG GGFSVPRFCA DSIFPRLNFV AEPPVQNLSI RDIHGCIWEF RHIYRGTPRR 180 HLLTTGWSKF VNSKKLVAGD SAVFVRKINT GELYVGVRRA TRGNDICERW NSTVLRSTEQ 240 TSSGGEVRWR TGQGRVATEA IVEAAEMAAR GMAFEVSCYP RAGWADFVVR AEAVEASSTV 300 FWTIGTRVKM AVETEDSSRT ACFQGTVSSV NLPRSGPWRG SPWRMLQITW DEPEVLQYAK 360 RVNPWQVECI LPTPQLHSGF PPSKKIKLPN GLLPDGEEKF FFPMTGLSNP LIGLCSPSLG 420 NYTSFPAGMQ GARQNQICVS SLSNVKSNNN LGLGTDNSLD EEFKPKLESV STKLNIGSSY 480 SDNFSPDSQS SVHFWDNELV TKPGSSSLTK VRVNSFQLFG KVIHVEPVEG GFDGFGCSEN 540 DSIEVFKEID GAVKSNISLS KPYIELFDSL DVQHQRASAV EACSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 5e-67 | 19 | 368 | 23 | 353 | Auxin response factor 1 |
4ldx_B | 5e-67 | 19 | 368 | 23 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791106.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016439970.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 1e-169 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A1S3XJ26 | 0.0 | A0A1S3XJ26_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7XNB2 | 0.0 | A0A1U7XNB2_NICSY; Auxin response factor | ||||
STRING | XP_009791106.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-170 | auxin response factor 17 |