PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 46298.6 Da PI: 6.2352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 5.9e-06 | 313 | 351 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_009790944.1 313 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 351 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.982 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0044 | 308 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.07E-6 | 312 | 355 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-10 | 312 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-9 | 312 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MAEEFQLGNG NWWDNTSISR NSAPTAASTT VSNMSSNYSN WQNTETQVDI KPRTFLDSGS 60 VLSESSGCGS SSGRGGSGGG GGGVLSAENN FQMMGLGLTS QPHDWNQSLL RGEKAESGFS 120 SILQQGDLNS NTNNYQLEAS NSQQDHHWNR QKIYSGNSEN SSSVDDYKQM NFVYNINPSN 180 NYGLSQESAA HDNHVMHSST TSSWSKFPQF LRTSPPEQQP LQPSMPPPPP HSQLHFSNNT 240 PFWNASAAAM NDVPSTLFPS NLHPQLPIPT IDEKAKNMGE VRDINKMSKK TSSETTNKRP 300 RDETPSPSPA FKVRKEKMGD RITALQQLVS PFGKTDTASV LSEAIEYIKF LHDQIGALGA 360 PYMKSGSSAM QHQQSSNKSE DAEGQNQDLR SRGLCLVPVS STFPVTHETT VDFWTPTFGG 420 TFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790944.1 | 0.0 | PREDICTED: transcription factor bHLH123-like | ||||
TrEMBL | A0A1U7XVH1 | 0.0 | A0A1U7XVH1_NICSY; transcription factor bHLH123-like | ||||
STRING | XP_009790944.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-70 | bHLH family protein |