PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790927.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 321aa    MW: 36373.3 Da    PI: 8.7297
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.9e-27180234155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LH++F e+v++LGG++kAtPk+il+lm+   L+++++kSHLQkYR+
  XP_009790927.1 180 KRRITWTQDLHDQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 234
                     689***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-14177234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-24178235IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-21180234IPR006447Myb domain, plants
PfamPF002493.4E-7184233IPR001005SANT/Myb domain
PfamPF143797.8E-16267313IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLIKGVSGCD DSLYGILCKH LESRTSKFSA SESSRTFGQF CENSDDHIMP MCSHELEMYD  60
TASTSNNPLD KYDLADENFK SRDTLHSLVQ SSVSFRHKPE SSTKNLLQQN KSALKGAIAS  120
RHPYPSMARG RQVKKDSFDS RIIKPCYVCQ LEKRPQSPPN ESVCISSSNV TPERAETTKK  180
RRITWTQDLH DQFCECVNRL GGAKKATPKA ILKLMNSYEL SISNIKSHLQ KYRVTCDVTV  240
SLKDAVKTEG SPRRSSFPAH GPETCPQILE ALKLQISVQQ SLYEQLEIQR SLQLRIEEQA  300
KQLKEMFDRQ AETNKNFQLS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14180233255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790927.10.0PREDICTED: uncharacterized protein LOC104238298 isoform X2
SwissprotQ0WVU32e-36PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A1U7XFT10.0A0A1U7XFT1_NICSY; uncharacterized protein LOC104238298 isoform X2
STRINGXP_009790926.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-39G2-like family protein