PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790926.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 326aa    MW: 36945.9 Da    PI: 8.7297
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.32.9e-27185239155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LH++F e+v++LGG++kAtPk+il+lm+   L+++++kSHLQkYR+
  XP_009790926.1 185 KRRITWTQDLHDQFCECVNRLGGAKKATPKAILKLMNSYELSISNIKSHLQKYRV 239
                     689***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.7E-14182239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-24183240IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-21185239IPR006447Myb domain, plants
PfamPF002493.5E-7189238IPR001005SANT/Myb domain
PfamPF143797.9E-16272318IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPSFLQLIKG VSGCDDSLYG ILCKHLESRT SKFSASESSR TFGQFCENSD DHIMPMCSHE  60
LEMYDTASTS NNPLDKYDLA DENFKSRDTL HSLVQSSVSF RHKPESSTKN LLQQNKSALK  120
GAIASRHPYP SMARGRQVKK DSFDSRIIKP CYVCQLEKRP QSPPNESVCI SSSNVTPERA  180
ETTKKRRITW TQDLHDQFCE CVNRLGGAKK ATPKAILKLM NSYELSISNI KSHLQKYRVT  240
CDVTVSLKDA VKTEGSPRRS SFPAHGPETC PQILEALKLQ ISVQQSLYEQ LEIQRSLQLR  300
IEEQAKQLKE MFDRQAETNK NFQLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14185238255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790926.10.0PREDICTED: uncharacterized protein LOC104238298 isoform X1
TrEMBLA0A1U7XMT50.0A0A1U7XMT5_NICSY; uncharacterized protein LOC104238298 isoform X1
STRINGXP_009790926.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2373522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-38G2-like family protein