PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 21692.5 Da PI: 7.966 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 54.1 | 6.5e-17 | 113 | 156 | 2 | 45 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 g+kdrh k+ T++g+RdRRv ls+++a++f+dLqd+L s XP_009790705.1 113 SGGKDRHNKVWTSKGLRDRRVSLSVNTAIQFYDLQDRLDTQHIS 156 689***********************************976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-15 | 114 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 12.073 | 115 | 173 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLLVCWWYNT GPCAFCGRIP NGLMEDTDKS QSVRTILGSD GKVWNNMSEN IDEKVKFVFL 60 LERENLLLNS VLIKFESQDE NEAVKGSHGL GGGGIGRLCG WPSNLIVRVS RASGGKDRHN 120 KVWTSKGLRD RRVSLSVNTA IQFYDLQDRL DTQHISEDKR SSAGTDEIDG DPNYQQQQQH 180 VSLSKKKAAL VIIV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790705.1 | 1e-142 | PREDICTED: uncharacterized protein LOC104238123 | ||||
TrEMBL | A0A1U7XW30 | 1e-141 | A0A1U7XW30_NICSY; uncharacterized protein LOC104238123 | ||||
STRING | XP_009790705.1 | 1e-142 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-21 | TCP family protein |