PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009790324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 497aa MW: 55439.3 Da PI: 5.4721 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.4 | 1.8e-36 | 17 | 109 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sws++ nsfvv++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_009790324.1 17 FLSKTYDMVDDPSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHKHLLKS 102 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k + XP_009790324.1 103 ISRRKPS 109 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.7E-40 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-35 | 12 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.7E-61 | 13 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.1E-32 | 17 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 56 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDGVHETTTV GNSPPPFLSK TYDMVDDPST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ 120 VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELVKLKQ QQQATDHQMQ TVGQRVQLME 180 KRQQQMMSFL AKAMQSPGFV AQLVHQQNGS NRRIAGMNKK RRLPDQDEEN VAGSPVNMLQ 240 DGRIVRYQPS MNEAAKALLR QILKINTPGR LDNRLKNTNG LLTDNPLSPK NALSGDTFSR 300 ISGVTLSEVL PMSSQSHINS DSGFPFNSCS SVMSESQSST TVVPGEAKVP KLPETDALNS 360 LTDHDLPKFS QEQMINRQET FGITGLKRPE TGNVPYIDNT QAILDGVTAI APDGFLADTH 420 VDVLLDDVPK LPAINDIFWD QILSASPLTG DTDEIGMEDG FEKEEDFLGV EENDLDKLNH 480 MCHLTEQMGL LSSAAQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-26 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-26 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-26 | 15 | 106 | 27 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790324.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b | ||||
Swissprot | Q84T61 | 1e-149 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A1U7XTU4 | 0.0 | A0A1U7XTU4_NICSY; heat stress transcription factor A-1b | ||||
STRING | XP_009790324.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5054 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-136 | heat shock factor 3 |
Publications ? help Back to Top | |||
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